Main Characteristics To Setup Run Time Environment Variable.
1)Improve the performance.
2)Resolve the error (or) Problem.
1)While run the GPU HPL Benchmark to get Max performance.
export CUDA_DGEMM_SPLIT=.96 (Related GPU)
export CUDA_DTRSM_SPLIT=.93 (Related GPU)
export OMP_NUM_THREADS=4 (set no of Threads)
export MKL_NUM_THREADS=4 (Set no of Threads)
2)PBS RUN TIME ENVIRONMENT VARIABLE
source /usr/share/Modules/init/sh
export MPI_DEBUG=all
export MPI_VERBOSE=1
unset OMP_NUM_THREAD
By through set the above variable we can resolve the below error message.
ERROR MESSAGE: Fatal error:
OpenMP threads have been requested with cut-off scheme Group, but these are only supported with cut-off scheme Verlet
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------
"I was detained, I was restrained" (The Smiths)
Error on node 1, will try to stop all the nodes
Halting parallel program mdrun_mpi on CPU 1 out of 16
-------------------------------------------------------
3)DEBUG MPI COMMUNICATION RELATED ISSUE
1)Improve the performance.
2)Resolve the error (or) Problem.
1)While run the GPU HPL Benchmark to get Max performance.
export CUDA_DGEMM_SPLIT=.96 (Related GPU)
export CUDA_DTRSM_SPLIT=.93 (Related GPU)
export OMP_NUM_THREADS=4 (set no of Threads)
export MKL_NUM_THREADS=4 (Set no of Threads)
2)PBS RUN TIME ENVIRONMENT VARIABLE
source /usr/share/Modules/init/sh
export MPI_DEBUG=all
export MPI_VERBOSE=1
unset OMP_NUM_THREAD
By through set the above variable we can resolve the below error message.
ERROR MESSAGE: Fatal error:
OpenMP threads have been requested with cut-off scheme Group, but these are only supported with cut-off scheme Verlet
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
-------------------------------------------------------
"I was detained, I was restrained" (The Smiths)
Error on node 1, will try to stop all the nodes
Halting parallel program mdrun_mpi on CPU 1 out of 16
-------------------------------------------------------
3)DEBUG MPI COMMUNICATION RELATED ISSUE
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